metadata

language:
  - en
license: other
license_bigbio_shortname: NCBI_LICENSE
pretty_name: PubTator Central

Dataset Card for PubTator Central

Dataset Description

Homepage: https://www.ncbi.nlm.nih.gov/research/pubtator/
Pubmed: True
Public: True
Tasks: Named Entity Recognition, Named Entity Disambiguation

PubTator Central (PTC, https://www.ncbi.nlm.nih.gov/research/pubtator/) is a web service for exploring and retrieving bioconcept annotations in full text biomedical articles. PTC provides automated annotations from state-of-the-art text mining systems for genes/proteins, genetic variants, diseases, chemicals, species and cell lines, all available for immediate download. PTC annotates PubMed (30 million abstracts), the PMC Open Access Subset and the Author Manuscript Collection (3 million full text articles). Updated entity identification methods and a disambiguation module based on cutting-edge deep learning techniques provide increased accuracy.

Citation Information

@article{10.1093/nar/gkz389,
  title        = {{PubTator central: automated concept annotation for biomedical full text articles}},
  author       = {Wei, Chih-Hsuan and Allot, Alexis and Leaman, Robert and Lu, Zhiyong},
  year         = 2019,
  month        = {05},
  journal      = {Nucleic Acids Research},
  volume       = 47,
  number       = {W1},
  pages        = {W587-W593},
  doi          = {10.1093/nar/gkz389},
  issn         = {0305-1048},
  url          = {https://doi.org/10.1093/nar/gkz389},
  eprint       = {https://academic.oup.com/nar/article-pdf/47/W1/W587/28880193/gkz389.pdf}
}