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--- |
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language: |
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- en |
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bigbio_language: |
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- English |
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license: other |
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multilinguality: monolingual |
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bigbio_license_shortname: GENIA_PROJECT_LICENSE |
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pretty_name: GENIA Relation Corpus |
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homepage: http://www.geniaproject.org/genia-corpus/relation-corpus |
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bigbio_pubmed: True |
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bigbio_public: True |
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bigbio_tasks: |
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- RELATION_EXTRACTION |
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--- |
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# Dataset Card for GENIA Relation Corpus |
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## Dataset Description |
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- **Homepage:** http://www.geniaproject.org/genia-corpus/relation-corpus |
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- **Pubmed:** True |
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- **Public:** True |
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- **Tasks:** RE |
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The extraction of various relations stated to hold between biomolecular entities is one of the most frequently |
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addressed information extraction tasks in domain studies. Typical relation extraction targets involve protein-protein |
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interactions or gene regulatory relations. However, in the GENIA corpus, such associations involving change in the |
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state or properties of biomolecules are captured in the event annotation. |
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The GENIA corpus relation annotation aims to complement the event annotation of the corpus by capturing (primarily) |
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static relations, relations such as part-of that hold between entities without (necessarily) involving change. |
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## Citation Information |
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``` |
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@inproceedings{pyysalo-etal-2009-static, |
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title = "Static Relations: a Piece in the Biomedical Information Extraction Puzzle", |
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author = "Pyysalo, Sampo and |
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Ohta, Tomoko and |
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Kim, Jin-Dong and |
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Tsujii, Jun{'}ichi", |
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booktitle = "Proceedings of the {B}io{NLP} 2009 Workshop", |
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month = jun, |
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year = "2009", |
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address = "Boulder, Colorado", |
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publisher = "Association for Computational Linguistics", |
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url = "https://aclanthology.org/W09-1301", |
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pages = "1--9", |
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} |
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@article{article, |
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author = {Ohta, Tomoko and Pyysalo, Sampo and Kim, Jin-Dong and Tsujii, Jun'ichi}, |
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year = {2010}, |
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month = {10}, |
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pages = {917-28}, |
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title = {A reevaluation of biomedical named entity - term relations}, |
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volume = {8}, |
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journal = {Journal of bioinformatics and computational biology}, |
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doi = {10.1142/S0219720010005014} |
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} |
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@MISC{Hoehndorf_applyingontology, |
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author = {Robert Hoehndorf and Axel-cyrille Ngonga Ngomo and Sampo Pyysalo and Tomoko Ohta and Anika Oellrich and |
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Dietrich Rebholz-schuhmann}, |
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title = {Applying ontology design patterns to the implementation of relations in GENIA}, |
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year = {} |
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} |
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``` |
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