Computation and Functional Studies Provide a Model for the Structure of the Zinc Transporter hZIP4.
Members of the Zrt and Irt protein (ZIP) family are a central participant in transition metal homeostasis as they function to increase the cytosolic concentration of zinc and/or iron. However, the lack of a crystal structure hinders elucidation of the molecular mechanism of ZIP proteins. Here, we employed GREMLIN, a co-evolution-based contact prediction approach in conjunction with the Rosetta structure prediction program to construct a structural model of the human (h) ZIP4 transporter. The predicted contact data are best fit by modeling hZIP4 as a dimer. Mutagenesis of residues that comprise a central putative hZIP4 transmembrane transition metal coordination site in the structural model alter the kinetics and specificity of hZIP4. Comparison of the hZIP4 dimer model to all known membrane protein structures identifies the 12-transmembrane monomeric Piriformospora indica phosphate transporter (PiPT), a member of the major facilitator superfamily (MFS), as a likely structural homolog.
['Antala|Sagar|S|', 'Ovchinnikov|Sergey|S|', 'Kamisetty|Hetunandan|H|', 'Baker|David|D|', 'Dempski|Robert E|RE|']
D000818:Animals D027682:Cation Transport Proteins D002413:Cations, Divalent D002478:Cells, Cultured D018360:Crystallography, X-Ray D006801:Humans D007501:Iron D008958:Models, Molecular D055503:Protein Multimerization D014981:Xenopus D015032:Zinc
zinc transporter metal homeostasis membrane protein computer modeling membrane biophysics metal ion-protein interaction protein evolution transport metal