Genome-Wide Association Study Reveals Novel Genomic Regions for Grain Yield and Yield-Related Traits in Drought-Stressed Synthetic Hexaploid Wheat.
Synthetic hexaploid wheat (SHW; 2n = 6x = 42, AABBDD, Triticum aestivum L.) is produced from an interspecific cross between durum wheat (2n = 4x = 28, AABB, T. turgidum L.) and goat grass (2n = 2x = 14, DD, Aegilops tauschii Coss.) and is reported to have significant novel alleles-controlling biotic and abiotic stresses resistance. A genome-wide association study (GWAS) was conducted to unravel these loci [marker⁻trait associations (MTAs)] using 35,648 genotyping-by-sequencing-derived single nucleotide polymorphisms in 123 SHWs. We identified 90 novel MTAs (45, 11, and 34 on the A, B, and D genomes, respectively) and haplotype blocks associated with grain yield and yield-related traits including root traits under drought stress. The phenotypic variance explained by the MTAs ranged from 1.1% to 32.3%. Most of the MTAs (120 out of 194) identified were found in genes, and of these 45 MTAs were in genes annotated as having a potential role in drought stress. This result provides further evidence for the reliability of MTAs identified. The large number of MTAs (53) identified especially on the D-genome demonstrate the potential of SHWs for elucidating the genetic architecture of complex traits and provide an opportunity for further improvement of wheat under rapidly changing climatic conditions.
['Bhatta|Madhav|M|0000-0002-4959-0481', 'Morgounov|Alexey|A|0000-0001-7082-5655', 'Belamkar|Vikas|V|', 'Baenziger|P Stephen|PS|0000-0002-9109-6954']
D018533:Biomass D055864:Droughts D005819:Genetic Markers D018745:Genome, Plant D055106:Genome-Wide Association Study D015810:Linkage Disequilibrium D058977:Molecular Sequence Annotation D010641:Phenotype D020641:Polymorphism, Single Nucleotide D011123:Polyploidy D025341:Principal Component Analysis D019655:Quantitative Trait, Heritable D012621:Seasons D012639:Seeds D013312:Stress, Physiological D014908:Triticum D014887:Weather
durum wheat single nucleotide polymorphism haplotype block root traits genes D-genome complex traits bread wheat genotyping-by-sequencing marker–trait association