Whole-genome sequence of Arthrinium phaeospermum, a globally distributed pathogenic fungus.
Arthrinium phaeospermum (Corda) M.B. Ellis is a globally distributed pathogenic fungus with a wide host range; its hosts include not only plants, but also humans and animals. This study aimed to develop genomic resources for A. phaeospermum to provide solid data and a theoretical basis for further studies of its pathogenesis, transcriptomics, proteomics, metabolomics and RNA genomics. The genome was obtained from the mycelia of the strain AP-Z13 using a combination of analyses with the high-throughput Illumina HiSeq 4000 system and PacBio RSII LongRead sequencing platform. Functional annotation was performed by BLASTing protein sequences against those in different publicly available databases to obtain their corresponding annotations. The genome is 48.45 Mb in size, with an N90 scaffold size of 1,931,147 bp, and encodes 19,836 putative predicted genes. This is the first report of the genome-scale assembly and annotation for A. phaeospermum, the first species in the genus Arthrinium to be subjected to whole genome sequencing.
['Li|Shujiang|S|', 'Tang|Yaowen|Y|', 'Fang|Xinmei|X|', 'Qiao|Tianmin|T|', 'Han|Shan|S|', 'Zhu|Tianhui|T|']
D001203:Ascomycota D050260:Carbohydrate Metabolism D004271:DNA, Fungal D005656:Fungal Proteins D063990:Gene Ontology D016681:Genome, Fungal D023281:Genomics D059014:High-Throughput Nucleotide Sequencing D054884:Host-Pathogen Interactions D053858:Metabolic Networks and Pathways D022661:RNA, Untranslated D012091:Repetitive Sequences, Nucleic Acid D064210:Secondary Metabolism D017422:Sequence Analysis, DNA D000073336:Whole Genome Sequencing
Whole-genome sequencing Arthrinium phaeospermum Pathogenic fungus Functional annotation