Practical Utilization of OryzaExpress and Plant Omics Data Center Databases to Explore Gene Expression Networks in Oryza Sativa and Other Plant Species.
Analysis of a gene expression network (GEN), which is constructed based on similarity of gene expression profiles, is a widely used approach to gain clues for new biological insights. The recent abundant availability of transcriptome data in public databases is enabling GEN analysis under various experimental conditions, and even comparative GEN analysis across species. To provide a platform to gain biological insights from public transcriptome data, valuable databases have been created and maintained. This chapter introduces the web database OryzaExpress, providing omics information on Oryza sativa (rice). The integrated database Plant Omics Data Center, supporting a wide variety of plant species, is also described to compare omics information among multiple plant species.
['Kudo|Toru|T|', 'Terashima|Shin|S|', 'Takaki|Yuno|Y|', 'Nakamura|Yukino|Y|', 'Kobayashi|Masaaki|M|', 'Yano|Kentaro|K|']
D019295:Computational Biology D030541:Databases, Genetic D020869:Gene Expression Profiling D018506:Gene Expression Regulation, Plant D053263:Gene Regulatory Networks D023281:Genomics D012275:Oryza D010944:Plants D059467:Transcriptome D064878:Web Browser
Plant Gene expression network Transcriptome Correspondence analysis Microarray Ortholog RNA-seq