Repeated observation of immune gene sets enrichment in women with non-small cell lung cancer.
There are different biological and clinical patterns of lung cancer between genders indicating intrinsic differences leading to increased sensitivity to cigarette smoke-induced DNA damage, mutational patterns of KRAS and better clinical outcomes in women while differences between genders at gene-expression levels was not previously reported. Here we show an enrichment of immune genes in NSCLC in women compared to men. We found in a GSEA analysis (by biological processes annotated from Gene Ontology) of six public datasets a repeated observation of immune gene sets enrichment in women. "Immune system process", "immune response", "defense response", "cellular defense response" and "regulation of immune system process" were the gene sets most over-represented while APOBEC3G, APOBEC3F, LAT, CD1D and CCL5 represented the top-five core genes. Characterization of immune cell composition with the platform CIBERSORT showed no differences between genders; however, there were differences when tumor tissues were compared to normal tissues. Our results suggest different immune responses in NSCLC between genders that could be related with the different clinical outcome.
['Araujo|Jhajaira M|JM|', 'Prado|Alexandra|A|', 'Cardenas|Nadezhda K|NK|', 'Zaharia|Mayer|M|', 'Dyer|Richard|R|', 'Doimi|Franco|F|', 'Bravo|Leny|L|', 'Pinillos|Luis|L|', 'Morante|Zaida|Z|', 'Aguilar|Alfredo|A|', 'Mas|Luis A|LA|', 'Gomez|Henry L|HL|', 'Vallejos|Carlos S|CS|', 'Rolfo|Christian|C|', 'Pinto|Joseph A|JA|']
D014408:Biomarkers, Tumor D002289:Carcinoma, Non-Small-Cell Lung D005260:Female D020869:Gene Expression Profiling D015972:Gene Expression Regulation, Neoplastic D006801:Humans D008175:Lung Neoplasms D008297:Male
immune gene sets non-small cell lung cancer gender GSEA CIBERSORT