Tracing overlapping biological signals in mid-infrared using colonic tissues as a model system.
AIM
To understand the interference of carbohydrates absorbance in nucleic acids signals during diagnosis of malignancy using Fourier transform infrared (FTIR) spectroscopy.


METHODS
We used formalin fixed paraffin embedded colonic tissues to obtain infrared (IR) spectra in the mid IR region using a bruker II IR microscope with a facility for varying the measurement area by varying the aperture available. Following this procedure we could measure different regions of the crypt circles containing different biochemicals. Crypts from 18 patients were measured. Circular crypts with a maximum diameter of 120 μm and a lumen of about 30 μm were selected for uniformity. The spectral data was analyzed using conventional and advanced computational methods.


RESULTS
Among the various components that are observed to contribute to the diagnostic capabilities of FTIR, the carbohydrates and nucleic acids are prominent. However there are intrinsic difficulties in the diagnostic capabilities due to the overlap of major absorbance bands of nucleic acids, carbohydrates and phospholipids in the mid-IR region. The result demonstrates colonic tissues as a biological system suitable for studying interference of carbohydrates and nucleic acids under ex vivo conditions. Among the diagnostic parameters that are affected by the absorbance from nucleic acids is the RNA/DNA ratio, dependent on absorbance at 1121 cm-1 and 1020 cm-1 that is used to classify the normal and cancerous tissues especially during FTIR based diagnosis of colonic malignancies. The signals of the nucleic acids and the ratio (RNA/DNA) are likely increased due to disappearance of interfering components like carbohydrates and phosphates along with an increase in amount of RNA.


CONCLUSION
The present work, proposes one mechanism for the observed changes in the nucleic acid absorbance in mid-IR during disease progression (carcinogenesis).
['Sahu|Ranjit Kumar|RK|', 'Salman|Ahmad|A|', 'Mordechai|Shaul|S|']
D001706:Biopsy D063646:Carcinogenesis D003106:Colon D003110:Colonic Neoplasms D006801:Humans D015212:Inflammatory Bowel Diseases D007413:Intestinal Mucosa D008853:Microscopy D008954:Models, Biological D009696:Nucleic Acids D016612:Paraffin Embedding D017550:Spectroscopy, Fourier Transform Infrared
Colonic tissue Nucleic acids Malignancy Fourier transform infrared diagnosis Spectral interference