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+
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+ ---
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+ language:
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+ - en
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+ license: unknown
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+ license_bigbio_shortname: UNKNOWN
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+ pretty_name: BioNLP 2019 BB
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+ ---
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+
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+
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+ # Dataset Card for BioNLP 2019 BB
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+
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+ ## Dataset Description
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+
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+ - **Homepage:** https://sites.google.com/view/bb-2019/dataset
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+ - **Pubmed:** True
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+ - **Public:** True
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+ - **Tasks:** Named Entity Recognition, Named Entity Disambiguation, Relation Extraction
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+
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+
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+ The task focuses on the extraction of the locations and phenotypes of
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+ microorganisms from PubMed abstracts and full-text excerpts, and the
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+ characterization of these entities with respect to reference knowledge
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+ sources (NCBI taxonomy, OntoBiotope ontology). The task is motivated by
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+ the importance of the knowledge on biodiversity for fundamental research
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+ and applications in microbiology.
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+
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+
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+
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+
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+ ## Citation Information
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+
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+ ```
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+ @inproceedings{bossy-etal-2019-bacteria,
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+ title = "Bacteria Biotope at {B}io{NLP} Open Shared Tasks 2019",
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+ author = "Bossy, Robert and
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+ Del{'e}ger, Louise and
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+ Chaix, Estelle and
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+ Ba, Mouhamadou and
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+ N{'e}dellec, Claire",
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+ booktitle = "Proceedings of The 5th Workshop on BioNLP Open Shared Tasks",
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+ month = nov,
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+ year = "2019",
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+ address = "Hong Kong, China",
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+ publisher = "Association for Computational Linguistics",
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+ url = "https://aclanthology.org/D19-5719",
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+ doi = "10.18653/v1/D19-5719",
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+ pages = "121--131",
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+ abstract = "This paper presents the fourth edition of the Bacteria
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+ Biotope task at BioNLP Open Shared Tasks 2019. The task focuses on
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+ the extraction of the locations and phenotypes of microorganisms
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+ from PubMed abstracts and full-text excerpts, and the characterization
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+ of these entities with respect to reference knowledge sources (NCBI
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+ taxonomy, OntoBiotope ontology). The task is motivated by the importance
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+ of the knowledge on biodiversity for fundamental research and applications
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+ in microbiology. The paper describes the different proposed subtasks, the
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+ corpus characteristics, and the challenge organization. We also provide an
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+ analysis of the results obtained by participants, and inspect the evolution
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+ of the results since the last edition in 2016.",
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+ }
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+
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+ ```