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upload hub_repos/bionlp_st_2019_bb/README.md to hub from bigbio repo
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README.md
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---
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language:
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- en
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license: unknown
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license_bigbio_shortname: UNKNOWN
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pretty_name: BioNLP 2019 BB
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---
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# Dataset Card for BioNLP 2019 BB
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## Dataset Description
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- **Homepage:** https://sites.google.com/view/bb-2019/dataset
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- **Pubmed:** True
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- **Public:** True
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- **Tasks:** Named Entity Recognition, Named Entity Disambiguation, Relation Extraction
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The task focuses on the extraction of the locations and phenotypes of
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microorganisms from PubMed abstracts and full-text excerpts, and the
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characterization of these entities with respect to reference knowledge
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sources (NCBI taxonomy, OntoBiotope ontology). The task is motivated by
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the importance of the knowledge on biodiversity for fundamental research
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and applications in microbiology.
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## Citation Information
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```
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@inproceedings{bossy-etal-2019-bacteria,
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title = "Bacteria Biotope at {B}io{NLP} Open Shared Tasks 2019",
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author = "Bossy, Robert and
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Del{'e}ger, Louise and
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Chaix, Estelle and
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Ba, Mouhamadou and
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N{'e}dellec, Claire",
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booktitle = "Proceedings of The 5th Workshop on BioNLP Open Shared Tasks",
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month = nov,
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year = "2019",
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address = "Hong Kong, China",
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publisher = "Association for Computational Linguistics",
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url = "https://aclanthology.org/D19-5719",
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doi = "10.18653/v1/D19-5719",
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pages = "121--131",
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abstract = "This paper presents the fourth edition of the Bacteria
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Biotope task at BioNLP Open Shared Tasks 2019. The task focuses on
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the extraction of the locations and phenotypes of microorganisms
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from PubMed abstracts and full-text excerpts, and the characterization
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of these entities with respect to reference knowledge sources (NCBI
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taxonomy, OntoBiotope ontology). The task is motivated by the importance
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of the knowledge on biodiversity for fundamental research and applications
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in microbiology. The paper describes the different proposed subtasks, the
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corpus characteristics, and the challenge organization. We also provide an
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analysis of the results obtained by participants, and inspect the evolution
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of the results since the last edition in 2016.",
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}
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```
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